The haze is back. PSI reading almost hitting 100. Getting worse each day, more reason to stay in lab, at least the BSC hood has air HEPA filtered. This is the view from my room this morning.
Saturday, October 07, 2006
haze
The haze is back. PSI reading almost hitting 100. Getting worse each day, more reason to stay in lab, at least the BSC hood has air HEPA filtered. This is the view from my room this morning.
Thursday, October 05, 2006
crack
Cracked the Hepes bottle when trying to scrape some white powder from the bottom of it. Looked at it for one minute and decided to go all the way to get every bit out and crack up the whole jar. This is the second bottle I ever broke in this lab. The first was last week when I dropped my bottle of CMC at the corridor after doing 5 plaque assay plates. Good thing the CMC finishing, so not wasted. B is going to scold me upside down tomorrow for sure. sigh...
Wednesday, October 04, 2006
free mooncake
Pleasant surprise from the Tourism board, one set of "Imperial Treasures Mooncake". Prof must have recomended x number of overseas scientists to come visit Red Dot. hahaha.
Came packed in a very nice box that will be put to good use later this month (wait and see...) The little mooncakes are all the 'normal' type. Big Sis of EM also brought some larger mooncakes and there was one with corn filling instead of egg yolk that I liked alot (3rd pic). Then in the middle of the mooncakes was a little box with teabags! To wash all the oil away. Looks ex. Got two bags and will try it out tomorrow with Fio.
Tuesday, October 03, 2006
RNAi scoops medical Nobel
Blatant cut and paste from Nature.com. One day they'll be talking about me. Yes, I'm still dreaming of it.
Gene silencers get something to shout about.
Two US geneticists who discovered one of the fundamental mechanisms by which gene expression is controlled have received a Nobel prize for their achievement. Andrew Fire and Craig Mello, who revealed the process of RNA interference (RNAi) in 1998, will share the US$1.4-million award.
RNAi, which occurs naturally in plants and animals, allows a gene to be specifically 'silenced'. This helps to regulate gene expression, and protects against viral infection and 'jumping genes' that can replicate and spread through the genome.
The process can also be induced experimentally by injecting tailor-made genetic sequences into cells, giving scientists a method for deliberately silencing a target gene. The method is now widely used as a basic genetic tool and is a promising candidate for future therapies.
"They have opened up a whole new area of biology, which was unsuspected before," says Nick Hastie, director of the Medical Research Council Human Genetics Unit in Edinburgh, UK. "It is also one of the quickest recognitions of a discovery; to find this in 1998 and get a Nobel Prize in 2006 is remarkable."
Fire, then working at the Carnegie Institution of Washington in Baltimore, Maryland, and Mello, who was at the University of Massachusetts Cancer Center in Worcester, made the discovery when studying the worm Caenorhabditis elegans, a much used workhorse for research geneticists.
They were investigating the process by which the information encoded in genes, made of DNA, forms a template for the manufacture of proteins — the 'central dogma' of molecular biology. The first step of this process is the transcription of the DNA code, housed in the cell nucleus, into a related molecule, messenger RNA (mRNA), which exits the nucleus.
Fire, Mello and their team wanted to see whether they could influence the production of muscle protein in the worms by tinkering with the mRNA transcribed from the relevant gene. When they injected more of the naturally produced mRNA, it had no effect. Likewise, when they injected a tailor-made 'antisense' sequence to bind to the natural 'sense' sequence, nothing happened to the worms.
But when they injected double-stranded RNA made up of both sense and antisense sequences bound together, the worms displayed twitching behaviour similar to that of genetic mutants with no muscle gene at all. They had silenced the gene.
Subsequent investigation showed that injecting specific double-stranded RNA can silence any gene, and that you only need to inject a few molecules to do it. When Fire and Mello published their findings in Nature1 in 1998, a new world was opened to geneticists.
Fire and Mello also unravelled the mechanism by which the gene interference works, and the reason why simply injecting antisense RNA doesn't silence genes.
Double-stranded RNA is recognized by a protein called Dicer, which breaks it up into tiny double-stranded fragments. These fragments are then bound by a protein complex, RISC, which strips away one of the strands, leaving a complex bearing a tiny strip of RNA. (Although this process results in single strands, starting with a single strand of RNA does not have the same effect as it activates neither Dicer nor RISC).
The resulting complex binds to naturally produced mRNA, cutting it into strips and destroying it, silencing its parent gene.
On the defence
The mechanism serves as a natural defence against viruses, which attempt to co-opt a host's protein-production mechanism by inserting their own genes into the host DNA. The process also protects a cell from rampant expression of host gene fragments that replicate and insinuate themselves all over the genome.
New opportunities for using the technique are still emerging. Besides fighting viral infection, the method could be adapted to combat cancer, endocrine disorders and cardiovascular disease.
In animal trials, RNAi was recently successful in silencing a gene that causes high cholesterol levels. But other work has sounded an alarm about the potential dangers of RNAi — one recent trial, for example, showed that it could prove fatal to mice (see 'RNA treatment kills mice') . Researchers are approaching clinical trials with caution.
Some have referred to the discovery as ushering in an RNA revolution, because it overrides the previous assumption that DNA is in control. In a 2004 review, Mello replied that "it is perhaps more apt to call it an RNA 'revelation'. RNA is not taking over the cell — it has been in control all along. We just didn't realize it until now."
Gene silencers get something to shout about.
Two US geneticists who discovered one of the fundamental mechanisms by which gene expression is controlled have received a Nobel prize for their achievement. Andrew Fire and Craig Mello, who revealed the process of RNA interference (RNAi) in 1998, will share the US$1.4-million award.
RNAi, which occurs naturally in plants and animals, allows a gene to be specifically 'silenced'. This helps to regulate gene expression, and protects against viral infection and 'jumping genes' that can replicate and spread through the genome.
The process can also be induced experimentally by injecting tailor-made genetic sequences into cells, giving scientists a method for deliberately silencing a target gene. The method is now widely used as a basic genetic tool and is a promising candidate for future therapies.
"They have opened up a whole new area of biology, which was unsuspected before," says Nick Hastie, director of the Medical Research Council Human Genetics Unit in Edinburgh, UK. "It is also one of the quickest recognitions of a discovery; to find this in 1998 and get a Nobel Prize in 2006 is remarkable."
Fire, then working at the Carnegie Institution of Washington in Baltimore, Maryland, and Mello, who was at the University of Massachusetts Cancer Center in Worcester, made the discovery when studying the worm Caenorhabditis elegans, a much used workhorse for research geneticists.
They were investigating the process by which the information encoded in genes, made of DNA, forms a template for the manufacture of proteins — the 'central dogma' of molecular biology. The first step of this process is the transcription of the DNA code, housed in the cell nucleus, into a related molecule, messenger RNA (mRNA), which exits the nucleus.
Fire, Mello and their team wanted to see whether they could influence the production of muscle protein in the worms by tinkering with the mRNA transcribed from the relevant gene. When they injected more of the naturally produced mRNA, it had no effect. Likewise, when they injected a tailor-made 'antisense' sequence to bind to the natural 'sense' sequence, nothing happened to the worms.
But when they injected double-stranded RNA made up of both sense and antisense sequences bound together, the worms displayed twitching behaviour similar to that of genetic mutants with no muscle gene at all. They had silenced the gene.
Subsequent investigation showed that injecting specific double-stranded RNA can silence any gene, and that you only need to inject a few molecules to do it. When Fire and Mello published their findings in Nature1 in 1998, a new world was opened to geneticists.
Fire and Mello also unravelled the mechanism by which the gene interference works, and the reason why simply injecting antisense RNA doesn't silence genes.
Double-stranded RNA is recognized by a protein called Dicer, which breaks it up into tiny double-stranded fragments. These fragments are then bound by a protein complex, RISC, which strips away one of the strands, leaving a complex bearing a tiny strip of RNA. (Although this process results in single strands, starting with a single strand of RNA does not have the same effect as it activates neither Dicer nor RISC).
The resulting complex binds to naturally produced mRNA, cutting it into strips and destroying it, silencing its parent gene.
On the defence
The mechanism serves as a natural defence against viruses, which attempt to co-opt a host's protein-production mechanism by inserting their own genes into the host DNA. The process also protects a cell from rampant expression of host gene fragments that replicate and insinuate themselves all over the genome.
New opportunities for using the technique are still emerging. Besides fighting viral infection, the method could be adapted to combat cancer, endocrine disorders and cardiovascular disease.
In animal trials, RNAi was recently successful in silencing a gene that causes high cholesterol levels. But other work has sounded an alarm about the potential dangers of RNAi — one recent trial, for example, showed that it could prove fatal to mice (see 'RNA treatment kills mice') . Researchers are approaching clinical trials with caution.
Some have referred to the discovery as ushering in an RNA revolution, because it overrides the previous assumption that DNA is in control. In a 2004 review, Mello replied that "it is perhaps more apt to call it an RNA 'revelation'. RNA is not taking over the cell — it has been in control all along. We just didn't realize it until now."
Monday, October 02, 2006
"Someone's" birthday
It's Someone's birthday celebration! Amazing chocolate brownie with generous wallnut on top and pieces of dates inside. But could hardly taste the dates. The nuts were wonderful though.
And prof thawed out a box of last years fruit cake. This is a major event, as the cake has matured over the months in the freezer. The alcohol saturated the cake and was really strong, to my delight. Like wine aging. The fruit cake finished faster than the brownies.
Friday, September 29, 2006
japan day 9
Last day in Japan. Ate ramen for the last time. Weird one. Thought would go for the 'dry' one with soup. The noodles was cold and you had this hot white soup to pour over it. Didnt know how to do it properly and ended up dunking the whole noodle lump into my other bowl of hot soup. Knew I did somethign stupid because the chefs were giggling at the backgroud.
Packed up and went to the Sapporo JR station, got a Y1040 ticket to the airport and took a little envelope to keep your ticket safe. But the size is almost the same as the ticket. Dont see how that would help preventing loss.
The inside of the train.
Some really tall structure on teh left. dont knwo what it is.
Passed lots of fields of corn and other veggies. Very nice scenery
The airport had this market setting and they sold almost everythign including live crabs. Wonder how they bring them on the plane. Also lots of free tid bits to try out. After the tour, you are half full.
AFter the small plane ride, we ate soba at the Tokyo airport. Not bad, the chilli powder very good.
The plane.
HEY! Got upgraded to business class!!! WOOOHOOO!!!
Plush seats. Legroom enough for Yao Ming
The seat adjustor. Three settings: upright, relax and sleep. Sleep is the most comfortable one- of course. They even have a lumbar massage button. No more sore bodies!
Personal light for reading
A choice of welcome drinks: green tea or champagne.
Continental dinner. appetizer
Japanese dinner. Appetizer
Jap dinner main course
My steak. almost well done.
Dessert
z`
To wash it all down.
Foldable table for dining. It disappears into the left armrest.
Oh yes, the last thing they served on the plane. Leaves you with sweet memories of the whole ride.
That concludes my Japan trip to attend the IMC16 congress. I shant bore you all with the academic agenda raised at the event although significant, it will probably bore most people to semi-death.
Wednesday, September 27, 2006
two litters?
This is quite amazing. My PBS control mice pics taken today. What happened was two weeks ago I got a family (1mother + 4youngs) and I did some experiments on the young, then now, two weeks later, the mother gives birth to another litter of 4! You can see the big white furry thing on top is the mum with the pinkish ones the just born and the larger also white furry things the 2 weeks old mice. In total, 8 youngs + 1 mum. Gonna read up on the gestation period and reproductive cycles of mice today to find out what happened.
Tuesday, September 26, 2006
japan day 8
Lunch time bento. I think this is Zeiss day
After lunch there were 'no' lectures so me, Mic and S took off to a flower park on the outskirts of the city. While waiting for the bus after our train ride, we saw a muah chee shop and went in. Lots of choice.
The dissapointing thing was that they all seem different on the outside but on the inside, they are all the same - red bean paste. Cheat!
The bus came anyway and there's only one fare stage for this route, Y200.
The park plan. Looks small but actually quite huge.
Beware of foxes crossing???
Nice tower, climbed the circular staircase inside. Mic got abit dizzy after that.
Good view from teh tower.
Pond nearby. Doesnt seem well maintained
Interesting tree, top side green, bottom side white.
Daffodils?
Daisy?
Guys playing pitch on the nice grass. Not the rough cow grass you normally get in the tropics but a finer Taiwan grass type that you can sit on and feels like carpet when you walk across.
Mic's artistic pic
Dahlia
Looks like lavender
Rows upon rows of Dahlias
Peony?
Lily
OK enough of flowers, back to the food fair. Its the last night on Susukino and I'm all out for street food! There was actually a closing banquet at the conference but when we got there on time, most of the food was gone. Managed to get half a plate of food. So needed a top up from the night market. Ate and watched some groups perform. There was this group with little drums which was quite dull and monotonous. The picture above is the last one where they have this ribbon tied to their hats and when they move their heads, the ribbon moved. I think its quite dizzying for them.
Good food + free shows = happy flaviguy.
Trumpet shells! Chewy and quite tasteless. Just had to try it coz will never get to back home.
A foot long!
This is dessert. There were actually 3 sticks. One is coated in fishy sauce, another in red bean and the thrid in black sesame.
Subscribe to:
Posts (Atom)
